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sequencing qc report tool  (CLC Bio)

 
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    CLC Bio sequencing qc report tool
    Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive <t>sequence</t> similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.
    Sequencing Qc Report Tool, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/sequencing qc report tool/product/CLC Bio
    Average 90 stars, based on 1 article reviews
    sequencing qc report tool - by Bioz Stars, 2026-04
    90/100 stars

    Images

    1) Product Images from "A draft genome of field pennycress ( Thlaspi arvense ) provides tools for the domestication of a new winter biofuel crop"

    Article Title: A draft genome of field pennycress ( Thlaspi arvense ) provides tools for the domestication of a new winter biofuel crop

    Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

    doi: 10.1093/dnares/dsu045

    Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive sequence similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.
    Figure Legend Snippet: Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive sequence similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.

    Techniques Used: Sequencing



    Similar Products

    sequencing qc report tool  (CLC Bio)
    90
    CLC Bio sequencing qc report tool
    Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive <t>sequence</t> similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.
    Sequencing Qc Report Tool, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/sequencing qc report tool/product/CLC Bio
    Average 90 stars, based on 1 article reviews
    sequencing qc report tool - by Bioz Stars, 2026-04
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive sequence similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.

    Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

    Article Title: A draft genome of field pennycress ( Thlaspi arvense ) provides tools for the domestication of a new winter biofuel crop

    doi: 10.1093/dnares/dsu045

    Figure Lengend Snippet: Comparative genomics of pennycress and other Brassicaceae species. (A) Syntenic path assembly dot plots comparing pennycress scaffolds >75 kilobases long to the seven Eutrema salsugineum pseudochromosomes fromYang et al. (B) BLASTp analysis of the 27,390 predicted pennycress peptides against predicted peptide sets from Capsella rubella , Brassica rapa , Arabidopsis thaliana (Bevan and Initiative, 2000), Arabidopsis lyrata , and Eutrema salsugineum . Highly similar is defined as pennycress predicted peptide having at least one BLASTp hit e < 1 × 10 −5 and positive sequence similarity >70%. (C) BLASTp analysis of predicted pennycress peptides against a protein database containing the predicted peptides of the five Brassicaceae species listed. Predicted peptides with top hits ( e ≤ 1 × 10 −5 and >70% hit length) to a predicted protein from the corresponding species are shown, with pennycress peptides with hits falling below this threshold shown in the lower right half of the pie chart.

    Article Snippet: FASTQ files from all sequencing runs were imported and subjected to quality control using the Sequencing QC Report tool in CLC Genomics Workbench Version 6.5 (CLC Bio, www.clcbio.com ).

    Techniques: Sequencing